THREaD Mapper StudioNow Mapping can be even more fun ! |
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Welcome to THREaD Mapper
Please note: users will not be able (without request) to change or delete an uploaded genotype dataset after the 'make public' checkbox has been activated.
List of Dataset Deposited on the server
Make public option will make your dataset accessible to the worldwide users
Chekout the turorial screencast before getting started if not the documentation If you encounter an Internal Error, Please use FireFox under XP, if the error still persists, send the Error Code and the name of the Browser More documentation updates coming soon ! tested on IE6, IE7, FireFox on WinXP, also tested with Google chrome on Fedora and WinXP. May Work on safari Mac. Please note IE8 is currently not supported News Feed: THREaD Mapper StudioLoading...
Credits and AcknowledgementsAlex Kozik's http://www.atgc.org/ and Madmapper inspiring us to create further visualizations tools/methods for genetic mapping Matplotlib http://matplotlib.sourceforge.net/ Networkx http://networkx.lanl.gov/index.html Numpy http://numpy.scipy.org/ Python PathRecon Module by Magwene http://biology.duke.edu/magwenelab/ (Bioinformatics 19(7):842-850) Python http://www.python.org/ Python Imaging Library (PIL) http://www.pythonware.com/products/pil/ Scipy http://www.scipy.org/ opus https://trondheim.cs.washington.edu/svn/opus/tags/4.2.1/opus_core/plot_functions.py Silk Icons, the high quality icons are from SILK ICONS http://www.famfamfam.com/lab/icons/silk/ ExtJS version 2.4 http://extjs.com and our sincere thanks to forum http://www.extjs.com/forum/ and many members on the mailing list there (We should be soon upgrading to the newer version) Jmol and a big thanks to Jmol users mailing list:[ http://jmol.sourceforge.net/ ] Future version will have the pure-python implementation of LPC http://www.maths.dur.ac.uk/~dma0je/lpc/Software%20Jochen%20Einbeck.htm(Please see the references there in) Web2py (http://www.web2py.com/) platform on which this server is running. Version 1.65.5 by Massimo Di Pierro and various members on the forum http://groups.google.com/group/web2py http://groups.google.com/group/web2py/browse_thread/thread/6746ef364e7f4717/1de9c4ab4faa9c9f?lnk=gst&q=Jitender#1de9c4ab4faa9c9f Antmap's Java code and help manual has been a lot of help and it really helped us to make provide you with Two-point distances and segregation distortion modules http://cse.naro.affrc.go.jp/iwatah/antmap/index.html and the Iwata H, Ninomiya S (2006) AntMap: constructing genetic linkage maps using an ant colony optimization algorithm. Breeding Science,Vol. 56 (2006) , No. 4 371-37756: 371-377 MstMap C++ source code and the sample dataset from the source http://wheat.pw.usda.gov/ggpages/maps/OWB/ Rush your suggestions, comments and Bug reportsEmail: threadmapper@gmail dot com Please Support us by Joining the threadmapper users and development Community Enjoy Mapping!! THREaD Mapper Studio Team John Innes Centre Happy Mapping !!
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