THREaD Mapper StudioAcknowledgement and References |
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AcknowledgementAcknowledgement and References:Credits and Acknowledgements:
Alex Kozik's http://www.atgc.org/ and Madmapper inspiring us to create further visualizations tools/methods for genetic mapping
Matplotlib http://matplotlib.sourceforge.net/
Networkx http://networkx.lanl.gov/index.html
Numpy http://numpy.scipy.org/
Python PathRecon Module by Magwene http://biology.duke.edu/magwenelab/ (Bioinformatics 19(7):842-850)
Python http://www.python.org/
Python Imaging Library (PIL) http://www.pythonware.com/products/pil/
Scipy http://www.scipy.org/
opus https://trondheim.cs.washington.edu/svn/opus/tags/4.2.1/opus_core/plot_functions.py
Silk Icons, the high quality icons are from SILK ICONS http://www.famfamfam.com/lab/icons/silk/
ExtJS version 2.4 http://extjs.com and our sincere thanks to forum http://www.extjs.com/forum/ and many members on the mailing list there (We should be soon upgrading to the newer version)
Jmol and a big thanks to Jmol users mailing list:[ http://jmol.sourceforge.net/ ]
Future version will have the pure-python implementation of LPC http://www.maths.dur.ac.uk/~dma0je/lpc/Software%20Jochen%20Einbeck.htm(Please see the references there in)
Web2py (http://www.web2py.com/) platform on which this server is running. Version 1.65.5 by Massimo Di Pierro and various members on the forum
http://groups.google.com/group/web2py
http://groups.google.com/group/web2py/browse_thread/thread/6746ef364e7f4717/1de9c4ab4faa9c9f?lnk=gst&q=Jitender#1de9c4ab4faa9c9f
Antmap's Java code and help manual has been a lot of help and it really helped us to make provide you with Two-point distances and segregation distortion modules http://cse.naro.affrc.go.jp/iwatah/antmap/index.html and the
Iwata H, Ninomiya S (2006) AntMap: constructing genetic linkage maps using an ant colony optimization algorithm. Breeding Science,Vol. 56 (2006) , No. 4 371-37756: 371-377
MstMap C++ source code and the sample dataset from the source http://wheat.pw.usda.gov/ggpages/maps/OWB/
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